When loading for the Garand primers need to be seated slightly below flush with the case head to avoid the possibility of the bolt face making direct contact with the primer during feeding and chambering. Correct firing pin protrusion from the bolt face is an issue. There are max/mins for this which can be checked with a gauge. There is a possibility that crud has accumulated inside the bolt which might be preventing the firing pin from going as far forward as it should. It is worth stripping the bolt to clean both the firing pin and the bolt interior. You might post a pic of the case heads to show primer strikes on both fired and unfired cases. I've fired a lot of Garand handloads with Rem primers with no problems. Another issue might be oil contamination of the primers as this percentage of failures just isn't normal.
Thanks purple, I was seating them below flush due to the reason you bring up. While the "weak" firing pin idea is in my head the strike on the primer for the rounds that fired and the ones that didn't don't look terribly different. Which makes me believe more than anything either I mucked them up or they were true duds.
I will clean the bolt, since it's the only thing on the rifle I didn't disassemble and clean.
I've attached a photo of the primers, the outside two shells are the FTF; middle fired.
Thanks everyone for your help.


















































