I was told by a experienced shooter on this forum that when the bullet travels inside a barrel, the barrel will mark/scratch the bullets (the riflings, the chamber etc...) an then affect the bullet shape / aerodynamics. Not very much, but enough to make a difference from rifle to rifle. I have a 5R barrel, so it must engrave/mark the bullet differently than a standard one...
I tought that it was a good theory, plausible. And it also explain the little difference I had when I compared my results VS a ballistic program results, I had more drop that what was supposed, knowing all the environment variables, and fired through a chronograph. When I played around (lowering) the BC to fit the ballistic program results, I began to match every time my results with the ballistics program, even with different shooting conditions (different wind, temperature, velocity and angle of fire) now the program results where pretty dead-on. That's why I adopted this theory...
Dark
Truing the dope on a ballistic program in that order is normal. I do the chrono, actual drops, true the MV vs drops, adjust the BC last if it warrants.(usually it's just a G1,2,3,4,5,6,7 error wrt bullet form.)
No doubt disfiguring a bullet, even slightly would have a degree of affect on bullet drag. I just have no good way to quantify that but I have witnessed twist rates, air density and velocity make observable differences in stability even at short distances.
Plus, I always take bullet OEM data with a grain of salt. especially advertised MVs and BCs.