Too many variables here. First off seat your bullets to .030 of the lands or as long as the magazine will allow, then leave it alone. Second, I assume you are reloading for this gun or we wouldn't be having this discussion, so how have you worked up a load? Did you start at x # of grains of x powder and load multiple sets of 3-5 in 1/2 grain increments or..... ? Don't mess with more than one variable at a time or you will never figure out the problem. If your reloads (again, worked up with different charges - same bullet, primer, case, etc.) show no sign of improving things and you are sure it is not your shooting, then look at floating your barrel, bedding the action, et al.
If you want to figure out your bullet seating depth, the Nosler manual has a very good procedure for working this out. I have no idea what that dowell is telling you. Keep it systematic and you will sort it out just fine.
Cheers