Hopefully anyone who steals your firearms doesn't have access to a top secret compound known as "abrasive compound." Two minutes with a patch, jag, cleaning rod and abrasive compound, and he'll have completely foiled all your work. This was NRA's answer to all the nonsense about states that wanted to have records of this kind of stuff on all guns sold. Even just shooting it a bunch more times, will change the characteristics of fired cases and bullets.
Go ahead and do it, if you want to. Bullseye and Unique are your friends for a project like this. After watching this video, let us know if you still want to even bother
http://www.youtube.com/watch?v=yAlixegkf0o
4:40-5:30