It's too bad you are taking it so negatively.
Contrary to popular opinion, a higher scope mount is better than low and Sako is more intelligent than most, which is why they did the right thing instead of what's popular with people who failed geometry.
A higher scope will help you maintain balance with a more upright head position.
It also increases your point blank range.
People have been critical of Cadex for using such a high scope orientation, but it their case, the high scope puts the barrel into a lower position inside the butt stock. This reduces muzzle jump and felt recoil.
Don't forget, there are two sides to every story and the other side may have good justification for what they did even if you don't agree with it for your specific cartridge.
I'm sure it is only a "problem" as you put it, for certain cartridges, but I would find a way to see the good side of it.
Sako makes a hell of a nice rifle and you should appreciate it.
I will make one suggestion though, and that is to examine how the awesome self centering Sako Optilock rings fit to the base... that joint is a little anemic in my opinion and I have had that joint laser welded on my Sakos. I also remove the vertical dowel on the rear base and shim the dovetail so it fits tight in the taper before I tighten the screw.