As Lodi says, all that happens is after a lot of shooting (read 100's of rounds), if you try to chamber a .357 it'll either be tight or simply won't seat without forcing something...a quick brush of the cylinder fixes it as it'll knock all the built up crap out.
As you're aware, the .38's are shorter than .357 Rem Mag, so they will foul the cylinder where a .357 would want to seat into. Whenever I bring my GP100 to the range, if I'm going to bring a lot of ammo, I'll just shoot .357 first...then .38's problem solved, clean at home.